olb::HaldaneRate< T > Class Template Reference

Class implementing Haldane kinetics, with 1st field being substrate concentration [S], 2nd being bacteria concentration [X]: nu = mu * [X]; mu = muMax * [S] / ([S] + Ks + [S]^2/KI) More...

#include <rate.h>

Inheritance diagram for olb::HaldaneRate< T >:

Collaboration diagram for olb::HaldaneRate< T >:

Public Member Functions
	HaldaneRate (T muMax, T Ks, T KI)
T	compute (std::vector< T > localFieldValues) override
Public Member Functions inherited from olb::Rate< T >
	Rate (std::vector< T > params)

Additional Inherited Members
Protected Attributes inherited from olb::Rate< T >
std::vector< T >	_params

Detailed Description

template<typename T>
class olb::HaldaneRate< T >

Class implementing Haldane kinetics, with 1st field being substrate concentration [S], 2nd being bacteria concentration [X]: nu = mu * [X]; mu = muMax * [S] / ([S] + Ks + [S]^2/KI)

Definition at line 79 of file rate.h.

Constructor & Destructor Documentation

HaldaneRate()

template<typename T >

olb::HaldaneRate< T >::HaldaneRate	(	T	muMax,
		T	Ks,
		T	KI )

Definition at line 85 of file rate.hh.

  : Rate<T>(std::vector<T>{muMax, Ks, KI})
{}

Member Function Documentation

compute()

template<typename T >

T olb::HaldaneRate< T >::compute ( std::vector< T > localFieldValues )

overridevirtual

Implements olb::Rate< T >.

Definition at line 90 of file rate.hh.

{
  // _params[0] = muMax
  // _params[1] = Ks
  // _params[2] = KI
  // localFieldValues[0] = [S]
  // localFieldValues[1] = [X]
  return this->_params[0] * localFieldValues[0] * localFieldValues[1]
              / (localFieldValues[0] + this->_params[1] + localFieldValues[0]*localFieldValues[0]/this->_params[2]) ;
}

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The documentation for this class was generated from the following files:

• src/reaction/rate.h
• src/reaction/rate.hh